| Research | Publications | ABCLab | Software | Teaching | Contacts |
FSH: Fast Spaced Seed Hashing
CLIOR: Higher Recall in Metagenomic Sequence Classification Exploiting Overlapping Reads
MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures
MissMax: alignment-free sequences comparison with mismatches through filtering and heuristics
MOODS a very efficient and user-friendly tool to search position weight matrices PWM (also known as position specific scoring matrices (PSSM), and also as weighted patterns, and also as profiles!). Designed when I was in Finland!
MOST: MOtif Searching Tool. My first steps into bioinformatics... this tool is no longer maintained, but at the time it was Cover Paper on Nucleic Acid Research!
DyWeb: dyad searching tool
Linear time Entropic Profiler
| Research | Publications | ABCLab | Software | Teaching | Contacts |